Well I would really be pulling for Turok on this one. I just don't see how it's possible though.

Samus is faster than Turok. She has a lot more armor than Turok. She is also more agile than Turok.

Turok definately has more and better firepower. The Chronoscepter would kill Samus in one hit, but it would have to be a direct hit. Unfortunately, that's not an easy thing to do. He could use his pink gun to do splash damage (BFG9000 style), and it wouldn't miss. However, I think Samus would be able to take the damage and keep coming.

Tek Arrows, Explosive Shotgun Shells, and a Pointy Knife are a lot cooler than Samus's weaponry, but I believe the infamous, "I am Turok!!!!" is just outmatched here.

What is it they say about silence being golden?